Search for Cheap Deals on
Hotels in San Rafael

Choose from 4777 San Rafael Hotel Deals

Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG

3.5 out of 5
1500 Van Ness Ave San Francisco CA
  • 35 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy free WiFi, breakfast (surcharge), and a 24-hour fitness center. Our guests praise the pool ...
9/10 Wonderful! (5,386 reviews)
Very clean, quiet, updated room. Comfortable bed and shower, too. Had a corner room with an amazing view of the city and Bay!

Reviewed on Mar 9, 2026

Holiday Inn Golden Gateway by IHG
Handlery Union Square Hotel

Handlery Union Square Hotel

3.5 out of 5
351 Geary St San Francisco CA
  • 37 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy free WiFi, a fitness center, and valet parking (surcharge). Our guests praise the pool and ...
8.8/10 Excellent! (2,925 reviews)
Located in the center of down town. Everything is walking distance. Rooms are nice and clean as well.

Reviewed on Mar 9, 2026

Handlery Union Square Hotel
Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf

4 out of 5
2500 Mason St San Francisco CA
  • 34 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy free breakfast, free WiFi, and a 24-hour fitness center. Our guests praise the breakfast ...
9/10 Wonderful! (7,410 reviews)
Great breakfast buffet! Great bartender and drinks. Parking crazy expensive. Nice rooms, great beds and pillows. Would stay again.

Reviewed on Mar 9, 2026

Hotel Riu Plaza Fisherman's Wharf
YOTEL San Francisco

YOTEL San Francisco

3 out of 5
1095 Market St San Francisco CA
  • 38 min drive from Mission San Rafael Arcangel
Stay at this hotel in San Francisco. Enjoy free breakfast, free WiFi, and a fitness center. Our guests praise the helpful staff and the clean rooms in our reviews. ...
8.2/10 Very Good! (1,024 reviews)
Room was tiny. Nice to have a towel warmer, but accessible from shower so towel got cold before it could be used.

Reviewed on Mar 6, 2026

YOTEL San Francisco
Hotel Julian

Hotel Julian

3 out of 5
940 Sutter Street San Francisco CA
  • 36 min drive from Mission San Rafael Arcangel
Stay at this hotel in San Francisco. Enjoy free WiFi, a fitness center, and a 24-hour front desk. Popular attractions Lombard Street and Pier 39 are located ...
8.6/10 Excellent! (652 reviews)
Clean room & staff was okay. Had 24 hour security which was nice. No valet parking like the website states, breakfast was not available & the restaurant was not open at all like it was advertised on the website either anytime i had a question in regards to either , staff had no answer.

Reviewed on Mar 9, 2026

Hotel Julian
Embassy Hotel

Embassy Hotel

2.5 out of 5
610 Polk St San Francisco CA
  • 37 min drive from Mission San Rafael Arcangel
Stay at this hotel in San Francisco. Enjoy valet parking (surcharge), a 24-hour front desk, and daily housekeeping. Popular attractions Lombard Street and Oracle ...
6.6/10 (637 reviews)
This hotel was absolutely filthy and not up to code in my view. The elevator did not work, there were pipes showing everywhere. The room was unclean. Sheets, bedding, and carpet were so old they were tattered.

Reviewed on Mar 9, 2026

Embassy Hotel
Hotel Zephyr San Francisco

Hotel Zephyr San Francisco

4 out of 5
250 Beach Street San Francisco CA
  • 34 min drive from Mission San Rafael Arcangel
Book a stay at this boutique hotel in San Francisco. Enjoy free WiFi, a 24-hour fitness center, and parking (surcharge). Our guests praise the helpful staff ...
8.6/10 Excellent! (2,464 reviews)
If you don’t plan on being in the room at all other than sleeping, it’s perfect. The showers are stained. The rooms are a little bit messy if you’re looking for a place to sleep this is perfect.

Reviewed on Mar 9, 2026

Hotel Zephyr San Francisco
DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina

4 out of 5
200 Marina Blvd Berkeley CA
  • 39 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in Berkeley. Enjoy free WiFi, a marina, and breakfast (surcharge). Our guests praise the breakfast and the restaurant ...
8.2/10 Very Good! (4,356 reviews)
Overall, it was very pleasant and an excellent choice

Reviewed on Mar 9, 2026

DoubleTree by Hilton Hotel Berkeley Marina
Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco

4 out of 5
424 Clay St San Francisco CA
  • 37 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy free WiFi, breakfast (surcharge), and room service. Our guests praise the helpful staff and ...
9/10 Wonderful! (2,999 reviews)
Clean room for an excellent price.

Reviewed on Mar 9, 2026

Club Quarters Hotel in San Francisco
Hilton San Francisco Union Square

Hilton San Francisco Union Square

4 out of 5
333 O'Farrell St. San Francisco CA
  • 37 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy 2 bars/lounges, breakfast (surcharge), and a 24-hour health club. Our guests praise the helpful ...
8.4/10 Very Good! (1,223 reviews)
Great property. Convenient location and close to so many restaurants.

Reviewed on Mar 9, 2026

Hilton San Francisco Union Square
Comfort Inn by the Bay

Comfort Inn by the Bay

2.5 out of 5
2775 Van Ness Ave San Francisco CA
  • 34 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy free breakfast, free WiFi, and parking (surcharge). Our guests praise the breakfast and the ...
8.4/10 Very Good! (1,347 reviews)
Really kind staff!

Reviewed on Mar 9, 2026

Comfort Inn by the Bay
Chancellor Hotel on Union Square

Chancellor Hotel on Union Square

3.5 out of 5
433 Powell St San Francisco CA
  • 37 min drive from Mission San Rafael Arcangel
Book a stay at this business-friendly hotel in San Francisco. Enjoy free WiFi, a 24-hour front desk, and daily housekeeping. Our guests praise the helpful staff ...
9.4/10 Exceptional! (3,226 reviews)
Nice and clean, walking distance to china town and many restaurants

Reviewed on Mar 9, 2026

Chancellor Hotel on Union Square
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find cheap hotels in San Rafael

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Rafael hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Rafael.

Choosing the right hotel in California has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Rafael’s 4,777 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $104. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get great San Rafael hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Rafael. No matter your reason for visiting San Rafael, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Rafael hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can unlock great deals on your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Rafael for as low as $104.

How many hotels are there in San Rafael?

With over 4,777 hotels in San Rafael, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $104.

How to find cheap car rentals in San Rafael?

Finding a cheap car rental deal in San Rafael is as easy as scoring cheap hotels in San Rafael. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can unlock great car rental deals if you book a Hotwire Hot Rate at the last minute.