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Hotels in San Juan Islands

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Last Minute Hot Rate® Hotel Deals in San Juan Islands

We Hide Hotel Names So You Can Find 4-Star Hotels At 2-Star Prices. Choose the Location, Star Rating & Amenities. Let Hotwire Find You the Best Deal. Book Today!

Hot Rate® Hotel

4-star Hotel in Surrey
4 out of 5

4-star Hotel

in Surrey
39 miles from San Juan Islands
33% off
Price was $124 per night and is now $83 per night
$124*
$83
per night
4-star Hotel in Surrey

Hot Rate® Hotel

3-star Hotel in Victoria North
3 out of 5

3-star Hotel

in Victoria North
21 miles from San Juan Islands
19% off
Price was $126 per night and is now $102 per night
$126*
$102
per night
3-star Hotel in Victoria North

Hot Rate® Hotel

3.5-star Hotel in Mount Vernon - Burlington
3.5 out of 5

3.5-star Hotel

in Mount Vernon - Burlington
30 miles from San Juan Islands
12% off
Price was $127 per night and is now $112 per night
$127*
$112
per night
3.5-star Hotel in Mount Vernon - Burlington

Hot Rate® Hotel

3.5-star Hotel in Saanich West - Saanich East
3.5 out of 5

3.5-star Hotel

in Saanich West - Saanich East
20 miles from San Juan Islands
20% off
Price was $142 per night and is now $114 per night
$142*
$114
per night
3.5-star Hotel in Saanich West - Saanich East
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Choose from 510 San Juan Islands Hotel Deals

San Juan Island Hostel
San Juan Island Hostel
1.5 out of 5
425 Argyle Ave, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $89 per night from Jun 11 to Jun 12
$89
per night
Jun 11 - Jun 12
Stay at this hostel in Friday Harbor. Enjoy free WiFi, free parking, and 4 bathrooms. Our guests praise the quiet rooms in our reviews. Popular attractions San ...
8/10 Very Good! (72 reviews)
"Great location and friendly atmosphere"

Reviewed on Sep 13, 2022

San Juan Island Hostel
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $195 per night from Jul 5 to Jul 6
$195
per night
Jul 5 - Jul 6
Stay at this business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the restaurant and ...
8/10 Very Good! (622 reviews)
"Recommended. Large suites! Spendy but fun."

Reviewed on Jun 5, 2023

Friday Harbor Suites
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
The price is $140 per night from Jun 13 to Jun 14
$140
per night
Jun 13 - Jun 14
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.4/10 Good! (694 reviews)
"This is a charming and run down property with extremely modest small rooms that is within walking distance to all that Friday Harbor has to offer. It’s across the street from a charming bakery, just a few streets away from the town brewery, and has lots of easy parking! We loved staying here even ..."

Reviewed on Jun 6, 2023

The Orca Inn
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $230 per night from Jun 11 to Jun 12
$230
per night
Jun 11 - Jun 12
Stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms in our ...
8.4/10 Very Good! (682 reviews)
"Always clean and the virtual Check in is easy with no hassles"

Reviewed on May 31, 2023

Earthbox Inn & Spa
Lopez Islander Resort
Lopez Islander Resort
3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
  • 17 min drive from Roche Harbor Marina
The price is $179 per night from Jun 12 to Jun 13
$179
per night
Jun 12 - Jun 13
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the clean rooms in our reviews. Popular attractions ...
8.4/10 Very Good! (221 reviews)
"Check-in was efficient and easy. Room was clean and nicely furnished. Restaurant was convenient and food was very good. Location was excellent and close to Lopez town center area. Would stay here again."

Reviewed on Jun 5, 2023

Lopez Islander Resort
Bird Rock Hotel
Bird Rock Hotel
2 out of 5
35 First Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
Stay at this spa hotel in Friday Harbor. Enjoy free WiFi, a full-service spa, and free bicycles on site. Our guests praise the helpful staff in our reviews. ...
8.6/10 Excellent! (283 reviews)
"My husband and I stayed here and we both really liked it. The hotel has a great and convenient location. Walking distance to restaurants, the Orca museum and the ferry. Communication is great even though is through text and email. We had a shared bathroom, which I was a bit nervous about. But the ..."

Reviewed on May 28, 2023

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Bird Rock Hotel
Outlook Inn on Orcas Island
Outlook Inn on Orcas Island
3 out of 5
171 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $389 per night from Jun 12 to Jun 13
$389
per night
Jun 12 - Jun 13
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the restaurant and the helpful staff in our reviews. ...
9/10 Wonderful! (389 reviews)
"There is much good to say about this property! The view from the Bayfront suite is amazing, the staff fantastic, the lovely amenities like gourmet coffee, heated floors, plush robes and so much more was a continual treat and surprise. If I were to make any comment on what they could improve it would ..."

Reviewed on Nov 21, 2022

Outlook Inn on Orcas Island
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
The price is $449 per night from Jun 11 to Jun 12
$449
per night
Jun 11 - Jun 12
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff and the comfy rooms in our reviews. Popular ...
9.8/10 Exceptional! (225 reviews)
"It is a beautiful gem! Pristine, quiet, rustic, and very tasteful. We loved spending time there. Can't wait to return."

Reviewed on Jun 4, 2023

Snug Harbor Resort
Landmark Inn on Orcas Island
Landmark Inn on Orcas Island
3 out of 5
67 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, free parking, and a terrace. Our guests praise the helpful staff and the convenient parking in our reviews. ...
9/10 Wonderful! (87 reviews)
"View from our balcony was amazing. Beds really comfortable. Right across the street from a little beach and park. Loved walking to the shops. We used the fire pit in the parking lot - liked the idea but aesthetics could use some work. Build a little area for the fire pit or select a site with a better ..."

Reviewed on Oct 11, 2022

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Landmark Inn on Orcas Island
Hillside House B&B
Hillside House B&B
3.5 out of 5
365 Carter Avenue, Friday Harbor, WA
  • 12 min drive from Roche Harbor Marina
The price is $269 per night from Jun 11 to Jun 12
$269
per night
Jun 11 - Jun 12
Stay at this 3.5-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the breakfast and the comfy beds in our reviews. ...
9/10 Wonderful! (115 reviews)
"Very Clean inside, Terrific breakfast, Very congenial host who provided a lot of information on the area sights, but king room had no view of harbor and the "spa" amenities/feel seemed to be lacking in the room."

Reviewed on Mar 11, 2023

Hillside House B&B
Friday Harbor Grand B&B
Friday Harbor Grand B&B
3 out of 5
345 Blair Ave, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $245 per night from Jun 11 to Jun 12
$245
per night
Jun 11 - Jun 12
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the breakfast and the comfy rooms in our reviews. ...
9.6/10 Exceptional! (109 reviews)
"The owner played a piano concert for us last night and made a very healthy and delicious breakfast for us. Highly recommend it."

Reviewed on May 23, 2023

Friday Harbor Grand B&B
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $419 per night from Jun 12 to Jun 13
$419
per night
Jun 12 - Jun 13
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast. Our guests praise the restaurant and the helpful ...
9.2/10 Wonderful! (137 reviews)
"Expensive but the absolute best place to stay in Friday Harbor. The views from the harbor view rooms are spectacular. The room was clean and comfortable. Staff and services were excellent."

Reviewed on Jun 7, 2023

Friday Harbor House
See all 510 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

HOTW-Hotel-Deals-726-959@2x.jpg (1918×258)*Savings based on Hot Rate® hotel bookings as compared with the lowest published rates found on leading retail travel sites. Hot Rates are different from retail rates. With Hot Rates you enter the date, location and star rating. Hotel revealed only after booking. All bookings final.

Find cheap hotels in San Juan Islands

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Islands hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Islands.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Islands’s 510 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $83. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get up to 60% San Juan Islands hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Islands. No matter your reason for visiting San Juan Islands, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Islands hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can save up to 60% off your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Islands for as low as $83.

How many hotels are there in San Juan Islands?

With over 510 hotels in San Juan Islands, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $83.

How to find cheap car rentals in San Juan Islands?

Finding a cheap car rental deal in San Juan Islands is as easy as scoring cheap hotels in San Juan Islands. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can even save up to 60% off a car rental deal if you book a Hotwire Hot Rate at the last minute.

Is it safe to travel to San Juan Islands now?

With recent COVID-19 closures and reopenings, many people are wondering, “Is it safe to travel to San Juan Islands right now?” When it’s time to book your getaway, be sure to check out the most up-to-date information on all safety measures, any restrictions, and guidance on traveling during the coronavirus pandemic.