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Choose from 103 Yankton Hotel Deals

Comfort Inn Yankton SD

Comfort Inn Yankton SD

2.5 out of 5
611 W 23rd Street Yankton SD
  • 10 min drive from Lewis and Clark Recreation Area
Book a stay at this business-friendly hotel in Yankton. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the helpful staff in our reviews. ...
8.8/10 Excellent! (708 reviews)
Staff was polite and helpful. Everything was clean. Nice room. Check in was efficient

Reviewed on Apr 12, 2026

Comfort Inn Yankton SD
Fairfield Inn & Suites by Marriott Yankton

Fairfield Inn & Suites by Marriott Yankton

3 out of 5
508 WEST 21ST STREET Yankton SD
  • 10 min drive from Lewis and Clark Recreation Area
Stay at this hotel in Yankton. Enjoy free breakfast, free parking, and a 24-hour front desk. Our guests praise the helpful staff in our reviews. Popular attractions ...
9.4/10 Exceptional! (169 reviews)
Great service, good breakfast, clean and new

Reviewed on Apr 23, 2026

Fairfield Inn & Suites by Marriott Yankton
Best Western Kelly Inn

Best Western Kelly Inn

2.5 out of 5
1607 E Highway 50 Yankton SD
  • 12 min drive from Lewis and Clark Recreation Area
Book a stay at this business-friendly hotel in Yankton. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the helpful staff in our reviews. ...
8/10 Very Good! (673 reviews)
Found black mold in the bathroom room 161

Reviewed on Apr 18, 2026

Best Western Kelly Inn
Lewis and Clark Resort

Lewis and Clark Resort

2.5 out of 5
43496 Shore Drive Yankton SD
  • 2 min walk from Lewis and Clark Recreation Area
Book a stay at this beach hotel in Yankton. Enjoy free WiFi, free parking, and an outdoor pool. Popular attractions Lewis and Clark Recreation Area and Midway ...
8.8/10 Excellent! (308 reviews)
Very easy parking good if you have a U-Haul and family beautiful lake in the back

Reviewed on Apr 11, 2026

Lewis and Clark Resort
Econo Lodge Inn & Suites Yankton

Econo Lodge Inn & Suites Yankton

2 out of 5
2410 Broadway Ave Yankton SD
  • 11 min drive from Lewis and Clark Recreation Area
Book a stay at this business-friendly hotel in Yankton. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Fox Run Plaza and Augusta Park ...
Econo Lodge Inn & Suites Yankton
Holiday Inn Express & Suites Yankton by IHG

Holiday Inn Express & Suites Yankton by IHG

2.5 out of 5
2607 Broadway Ave Yankton SD
  • 11 min drive from Lewis and Clark Recreation Area
Book a stay at this business-friendly hotel in Yankton. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the helpful staff in our reviews. ...
9.2/10 Wonderful! (427 reviews)
Our room had bed bugs!

Reviewed on Apr 20, 2026

Holiday Inn Express & Suites Yankton by IHG
Super 8 by Wyndham Yankton

Super 8 by Wyndham Yankton

2 out of 5
1603 East Highway 50 Yankton SD
  • 12 min drive from Lewis and Clark Recreation Area
Book a stay at this business-friendly hotel in Yankton. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the helpful staff in our reviews. ...
7.6/10 Good! (282 reviews)
The staff was nice clean and comforable

Reviewed on Apr 6, 2026

Super 8 by Wyndham Yankton
Econo Lodge Inn & Suites Yankton, SD

Econo Lodge Inn & Suites Yankton, SD

2 out of 5
2410 Broadway Ave Yankton SD
  • 11 min drive from Lewis and Clark Recreation Area
Stay at this hotel in Yankton. Enjoy free parking and an indoor pool. Popular attractions Fox Run Plaza and Augusta Park are located nearby.
Econo Lodge Inn & Suites Yankton, SD
Pet-friendly Apt: 2 Blocks to Riverside Park!

Pet-friendly Apt: 2 Blocks to Riverside Park!

3 out of 5
Yankton SD
  • 9 min drive from Lewis and Clark Recreation Area
Stay at this apartment in Yankton. Enjoy free parking and air conditioning. Popular attractions G.A.R. Hall and Riverside Park Amphitheatre are located ...
Pet-friendly Apt: 2 Blocks to Riverside Park!
Half-mi to Dtwn Yankton & River: Charming Home!

Half-mi to Dtwn Yankton & River: Charming Home!

3 out of 5
Yankton SD
  • 10 min drive from Lewis and Clark Recreation Area
Stay at this cottage in Yankton. Enjoy free parking and air conditioning. Popular attractions G.A.R. Hall and Riverside Park are located nearby.
Half-mi to Dtwn Yankton & River: Charming Home!
Regal River Retreat in the Heart of Yankton!

Regal River Retreat in the Heart of Yankton!

3.5 out of 5
Yankton SD
  • 9 min drive from Lewis and Clark Recreation Area
Book a stay at this beach apartment in Yankton. Enjoy free parking, a marina, and in-room fireplaces. Popular attractions Riverside Park Amphitheatre and Meridian ...
Regal River Retreat in the Heart of Yankton!
Pet-friendly Apt: Walk to Missouri River!

Pet-friendly Apt: Walk to Missouri River!

3 out of 5
Yankton SD
  • 9 min drive from Lewis and Clark Recreation Area
Stay at this apartment in Yankton. Enjoy free parking, snorkeling on site, and in-room fireplaces. Popular attractions G.A.R. Hall and Riverside Park Amphitheatre ...
Pet-friendly Apt: Walk to Missouri River!
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find cheap hotels in Yankton

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If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $81. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get great Yankton hotel deals at the last minute.

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Frequently Asked Questions About Yankton hotels

Where can I find the best last-minute travel deals?

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How many hotels are there in Yankton?

With over 103 hotels in Yankton, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $81.

How to find cheap car rentals in Yankton?

Finding a cheap car rental deal in Yankton is as easy as scoring cheap hotels in Yankton. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can unlock great car rental deals if you book a Hotwire Hot Rate at the last minute.