Search Cheap Flights to
San Juan Islands

Search 400 airlines and 321,000 hotels worldwide.

Stop Planning & Start Exploring

FREE 24 hour cancellation on most flights

San Juan Islands Flights as Low as $140

Prices found within past 7 days. Prices and availability subject to change. Additional terms may apply.

Bargain Flight
Tue, Aug 6 - Tue, Aug 6
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$140 Roundtrip, just found
$140
Roundtrip
just found
Select Bargain Flight flight, departing Tue, Aug 6 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 6, priced at $140 just found
Alaska Airlines
Tue, Aug 6 - Tue, Aug 6
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$143 Roundtrip, just found
$143
Roundtrip
just found
Select Alaska Airlines flight, departing Tue, Aug 6 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 6, priced at $143 just found
Delta
Tue, Jul 23 - Tue, Jul 23
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$144 Roundtrip, found 1 hour ago
$144
Roundtrip
found 1 hour ago
Select Delta flight, departing Tue, Jul 23 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Jul 23, priced at $144 found 1 hour ago
Bargain Flight
Tue, Aug 20 - Tue, Aug 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$145 Roundtrip, found 1 hour ago
$145
Roundtrip
found 1 hour ago
Select Bargain Flight flight, departing Tue, Aug 20 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 27, priced at $145 found 1 hour ago
Alaska Airlines
Tue, Aug 6 - Tue, Aug 6
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$149 Roundtrip, just found
$149
Roundtrip
just found
Select Alaska Airlines flight, departing Tue, Aug 6 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 6, priced at $149 just found
United
Tue, Aug 20 - Tue, Aug 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$149 Roundtrip, found 1 hour ago
$149
Roundtrip
found 1 hour ago
Select United flight, departing Tue, Aug 20 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 27, priced at $149 found 1 hour ago
Alaska Airlines
Tue, Aug 20 - Tue, Aug 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$150 Roundtrip, found 1 hour ago
$150
Roundtrip
found 1 hour ago
Select Alaska Airlines flight, departing Tue, Aug 20 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 27, priced at $150 found 1 hour ago
Frontier Airlines
Mon, Aug 19 - Tue, Aug 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$150 Roundtrip, found 1 hour ago
$150
Roundtrip
found 1 hour ago
Select Frontier Airlines flight, departing Mon, Aug 19 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 27, priced at $150 found 1 hour ago
Alaska Airlines
Tue, Aug 6 - Tue, Aug 6
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$153 Roundtrip, just found
$153
Roundtrip
just found
Select Alaska Airlines flight, departing Tue, Aug 6 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 6, priced at $153 just found
Alaska Airlines
Mon, Aug 19 - Wed, Aug 28
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$155 Roundtrip, found 4 hours ago
$155
Roundtrip
found 4 hours ago
Select Alaska Airlines flight, departing Mon, Aug 19 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Aug 28, priced at $155 found 4 hours ago
Frontier Airlines
Tue, Aug 20 - Tue, Aug 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$155 Roundtrip, found 1 hour ago
$155
Roundtrip
found 1 hour ago
Select Frontier Airlines flight, departing Tue, Aug 20 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 27, priced at $155 found 1 hour ago
Alaska Airlines
Sat, Aug 3 - Wed, Aug 7
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$158 Roundtrip, found 7 hours ago
$158
Roundtrip
found 7 hours ago
Select Alaska Airlines flight, departing Sat, Aug 3 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Aug 7, priced at $158 found 7 hours ago
Alaska Airlines
Tue, Aug 6 - Tue, Aug 6
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$158 Roundtrip, just found
$158
Roundtrip
just found
Select Alaska Airlines flight, departing Tue, Aug 6 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 6, priced at $158 just found
Frontier Airlines
Tue, Jun 11 - Wed, Jun 12
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$160 Roundtrip, found 2 days ago
$160
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Tue, Jun 11 from San Francisco Intl. to Seattle - Tacoma Intl., returning Wed, Jun 12, priced at $160 found 2 days ago
Alaska Airlines
Wed, Aug 14 - Tue, Aug 27
SFO
San Francisco Intl.
PAE
Seattle Paine Field Intl. Airport
$192 Roundtrip, found 15 hours ago
$192
Roundtrip
found 15 hours ago
Select Alaska Airlines flight, departing Wed, Aug 14 from San Francisco Intl. to Seattle Paine Field Intl. Airport, returning Tue, Aug 27, priced at $192 found 15 hours ago
American Airlines
Tue, Aug 20 - Tue, Aug 27
SFO
San Francisco Intl.
SEA
Seattle - Tacoma Intl.
$277 Roundtrip, found 1 hour ago
$277
Roundtrip
found 1 hour ago
Select American Airlines flight, departing Tue, Aug 20 from San Francisco Intl. to Seattle - Tacoma Intl., returning Tue, Aug 27, priced at $277 found 1 hour ago

Cheap Flights to San Juan Islands

Fall in love at first flight with your vacation to San Juan Islands by saving a ton of cash on your last-minute cheap flight. There’s no more scouring the internet for a good deal—book your flight to San Juan Islands on Hotwire, and you’ll be up, up, and on a getaway in no time.

Because once the wheels are down in San Juan Islands, the good times start rolling. So buckle up, you’re in for a fun ride.

Just the right flight

Don’t waste your time on endless searches for cheap airline tickets oneway or roundtrip. We’ll have you on your way to San Juan Islands with a tiny bag of pretzels in your hand before you can say “tray tables in the upright position”—and for a ticket price that works for your vacay budget.

So all you have to worry about is where you’re headed after the SEA airport.

Frequently Asked Questions About flights to San Juan Islands

What is the cheapest month to fly to San Juan Islands?

Airline ticket prices fluctuate all the time, depending on the day of the week or the month of the year. The cheapest round trip flights to San Juan Islands are in August, but when you book your flight on Hotwire, savings are always in season.

How many airlines fly to San Juan Islands?

Variety is the spice of life, even when it comes to booking your next trip. Want options for airlines? You’ll find 14 to choose from for your flight to San Juan Islands.

What airport is best to fly into San Juan Islands?

When you’re planning your trip to San Juan Islands, convenience is the name of the game. Luckily, San Juan Islands Deer Harbor Seaplane Base Airport is nearby so you can deplane and get going on checking off everything on your San Juan Islands must-do list.

How much are flights to San Juan Islands?

Got very cheap flights on your vacation itinerary? When you book your airline tickets to San Juan Islands on Hotwire, you may just get what’s on your getaway wish list. With tickets as low as $140, you’ll have leftover cash for at least a magazine and a bottle of water at the airport book store.

How to get cheap flights to San Juan Islands?

The trick to saving a stack of cash on your flight to San Juan Islands? Snatch up that Hotwire flight deal when you see a killer rate because it could be gone in a flash. And with flights as low as $140 right now, why wait?

Can I fly to San Juan Islands right now?

With recent COVID-19 closures and reopenings, many people are wondering, “Is it safe to travel to  right now?” When it’s time to book your flight, be sure to check out the most up-to-date information on all safety measures, any restrictions, and guidance on traveling during the coronavirus pandemic.

San Juan Islands Flight Information
Destination airport
Seattle - Tacoma Intl.
Destination airport IATA code
SEA
Roundtrip price
$112

Last Minute Hotel Deals in San Juan Islands

The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
The price is $120 per night from May 30 to May 31
$120
per night
May 30 - May 31
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (796 reviews)
Good Budget Inn
"The Orca Inn is a good budget option when staying in Friday Harbour. If you are looking for luxary accommodation this place might not be for you. Interior is somewhat rustic and dated but it was extremely clean, room had a cabin like feel. Fridge and microwave were in room. Parking was also ..."

Reviewed on May 25, 2024

The Orca Inn
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
The price is $195 per night from Jun 2 to Jun 3
$195
per night
Jun 2 - Jun 3
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (773 reviews)
Comfortable and quiet !
"Nice simple room. Very quiet."

Reviewed on May 24, 2024

Friday Harbor Suites
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $240 per night from May 30 to May 31
$240
per night
May 30 - May 31
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the pool and the helpful staff in our ...
8.6/10 Excellent! (789 reviews)
"Plots of kids in the pool - Covered pool loud and not relaxing. Should have adults only time or no kids after 6pm. During our stay the pool was packed and not usable for us."

Reviewed on May 17, 2024

Earthbox Inn & Spa
Lopez Islander Resort
Lopez Islander Resort
3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
The price is $179 per night from May 30 to May 31
$179
per night
May 30 - May 31
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the restaurant and the helpful staff in our ...
8.4/10 Very Good! (261 reviews)
"Enjoyed my stay while working on the island."

Reviewed on May 17, 2024

Lopez Islander Resort
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff and the clean rooms in our reviews. Popular ...
9.8/10 Exceptional! (291 reviews)
"Peaceful place to getaway with great staff!"

Reviewed on May 26, 2024

Get rates
Snug Harbor Resort
Outlook Inn on Orcas Island
Outlook Inn on Orcas Island
3 out of 5
171 Main St, Eastsound, WA
The price is $413 per night from Jun 3 to Jun 4
$413
per night
Jun 3 - Jun 4
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Darvill's Bookstore and Orcas Island Historical ...
9/10 Wonderful! (413 reviews)
"We loved the Outlook Inn. Great room, veryy comfortable. The staff is super nice and very responsive. Loved how everything in town is in walking distance. We had a great stay."

Reviewed on May 24, 2024

Outlook Inn on Orcas Island
Tucker House Inn
Tucker House Inn
4 out of 5
275 C Street, Friday Harbor, WA
The price is $295 per night from Jun 18 to Jun 19
$295
per night
Jun 18 - Jun 19
Stay at this 4-star beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Popular attractions Whale Museum and San Juan Islands ...
9.2/10 Wonderful! (216 reviews)
"0"

Reviewed on May 24, 2024

Tucker House Inn
Bird Rock Hotel
Bird Rock Hotel
2 out of 5
35 First Street, Friday Harbor, WA
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the clean rooms in our reviews. Popular attractions ...
8.6/10 Excellent! (309 reviews)
"Cool old building with modern updates. The remote check in was clear and smooth.We received a couple texts from staff checking in during our stay, so it still felt very personable. Would highly recommend."

Reviewed on Nov 18, 2023

Get rates
Bird Rock Hotel
See all 528 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Hotels With Free Airport Shuttle

Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is $240 per night from May 30 to May 31
$240
per night
May 30 - May 31
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the pool and the helpful staff in our ...
8.6/10 Excellent! (789 reviews)
"Plots of kids in the pool - Covered pool loud and not relaxing. Should have adults only time or no kids after 6pm. During our stay the pool was packed and not usable for us."

Reviewed on May 17, 2024

Earthbox Inn & Spa
See all 528 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.