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Hotels in San Juan Islands

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Last Minute Hot Rate® Hotel Deals in San Juan Islands

We Hide Hotel Names So You Can Find 4-Star Hotels At 2-Star Prices. Choose the Location, Star Rating & Amenities. Let Hotwire Find You the Best Deal. Book Today!

Hot Rate® Hotel

3-star Hotel in Victoria North
3 out of 5

3-star Hotel

in Victoria North
21 miles from San Juan Islands
$103
per night
$137 total
incl. taxes & fees
3-star Hotel in Victoria North

Hot Rate® Hotel

3.5-star Hotel in Mount Vernon - Burlington
3.5 out of 5

3.5-star Hotel

in Mount Vernon - Burlington
30 miles from San Juan Islands
$112
per night
$136 total
incl. taxes & fees
3.5-star Hotel in Mount Vernon - Burlington

Hot Rate® Hotel

3.5-star Hotel in Lynden
3.5 out of 5

3.5-star Hotel

in Lynden
34 miles from San Juan Islands
$112
per night
$136 total
incl. taxes & fees
3.5-star Hotel in Lynden

Hot Rate® Hotel

3-star Hotel in Victoria North
3 out of 5

3-star Hotel

in Victoria North
21 miles from San Juan Islands
$115
per night
$154 total
incl. taxes & fees
3-star Hotel in Victoria North
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Choose from 528 San Juan Islands Hotel Deals

Bird Rock Hotel
Bird Rock Hotel
2 out of 5
35 First Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $145 per night from Apr 23 to Apr 24
$145
per night
Apr 23 - Apr 24
Stay at this hotel in Friday Harbor. Enjoy free WiFi, a terrace, and daily housekeeping. Our guests praise the clean rooms in our reviews. Popular attractions ...
8.6/10 Excellent! (307 reviews)
"Cool old building with modern updates. The remote check in was clear and smooth.We received a couple texts from staff checking in during our stay, so it still felt very personable. Would highly recommend."

Reviewed on Nov 18, 2023

Bird Rock Hotel
Friday Harbor Suites
Friday Harbor Suites
2.5 out of 5
680 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $194 per night from May 19 to May 20
$194
per night
May 19 - May 20
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms ...
8.2/10 Very Good! (754 reviews)
"we loved loved our 1 night stay. the bed configuration worked so well for our family of 4 with 2 kids. the rooms were clean and the kitchen was stocked with plates and spoons and microwave and fridge. Only small complaint was there was no Keurig coffee in the room, i had to go downstairs to get coffee. ..."

Reviewed on Apr 16, 2024

Friday Harbor Suites
Earthbox Inn & Spa
Earthbox Inn & Spa
2.5 out of 5
410 Spring Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $210 per night from Apr 23 to Apr 24
$210
per night
Apr 23 - Apr 24
Stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the pool and the helpful staff in our reviews. ...
8.6/10 Excellent! (776 reviews)
Very nice place!
"It was incredible! Everything was so amazing and we will definitely be staying again!!! The only criticism I would have is the floors were a little bit dirty, they did make the bottoms of our feet turn dark, however, this to us is a very minor thing, just something to note! Our stay though was absolutely ..."

Reviewed on Apr 15, 2024

Earthbox Inn & Spa
Snug Harbor Resort
Snug Harbor Resort
2.5 out of 5
1997 Mitchell Bay Rd, Friday Harbor, WA
  • 7 min drive from Roche Harbor Marina
The price is $215 per night from Apr 24 to Apr 25
$215
per night
Apr 24 - Apr 25
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff and the clean rooms in our reviews. Popular ...
9.8/10 Exceptional! (277 reviews)
"Clean and cozy place to stay. Not much eating places around due to off season. Super beautiful view and quiet though."

Reviewed on Apr 12, 2024

Snug Harbor Resort
Outlook Inn on Orcas Island
Outlook Inn on Orcas Island
3 out of 5
171 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $340 per night from Apr 21 to Apr 22
$340
per night
Apr 21 - Apr 22
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Darvill's Bookstore and Orcas Island Historical ...
9/10 Wonderful! (409 reviews)
"This is a beautiful, clean and tranquil location, the staff is very friendly and helpful. Highly recommend."

Reviewed on Apr 14, 2024

Outlook Inn on Orcas Island
The Orca Inn
The Orca Inn
2 out of 5
770 Mullis St., Friday Harbor, WA
  • 14 min drive from Roche Harbor Marina
The price is $150 per night from Apr 20 to Apr 21
$150
per night
Apr 20 - Apr 21
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.4/10 Good! (785 reviews)
"Good stay for the price"

Reviewed on Apr 17, 2024

The Orca Inn
Lopez Islander Resort
Lopez Islander Resort
3.5 out of 5
2864 Fisherman Bay Rd, Lopez Island, WA
  • 17 min drive from Roche Harbor Marina
The price is $179 per night from Apr 21 to Apr 22
$179
per night
Apr 21 - Apr 22
Stay at this 3.5-star hotel in Lopez Island. Enjoy free WiFi, free parking, and an outdoor pool. Our guests praise the restaurant and the helpful staff in our ...
8.4/10 Very Good! (256 reviews)
"Great place to stay. But hot tub was out of order 😢"

Reviewed on Apr 1, 2024

Lopez Islander Resort
Friday Harbor House
Friday Harbor House
3.5 out of 5
130 West Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $309 per night from Apr 21 to Apr 22
$309
per night
Apr 21 - Apr 22
Stay at this 3.5-star business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast. Popular attractions Whale Museum and San Juan Islands ...
9.4/10 Exceptional! (186 reviews)
"Everything about our stay has been incredible! The concierge is helpful, the views amazing and everything you would need in walking distance. We will recommend this hotel to everyone! We can’t wait to come back!!"

Reviewed on Apr 14, 2024

Friday Harbor House
Tucker House Inn
Tucker House Inn
4 out of 5
275 C Street, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $203 per night from Apr 22 to Apr 23
$203
per night
Apr 22 - Apr 23
Stay at this 4-star beach B&B in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Popular attractions Whale Museum and San Juan Islands ...
9.2/10 Wonderful! (212 reviews)
"Last minute reservation. Such a great time and location. Would definitely recommend!"

Reviewed on Apr 17, 2024

Tucker House Inn
Landmark Inn on Orcas Island
Landmark Inn on Orcas Island
3 out of 5
67 Main St, Eastsound, WA
  • 14 min drive from Roche Harbor Marina
The price is $199 per night from Apr 23 to Apr 24
$199
per night
Apr 23 - Apr 24
Stay at this 3-star hotel in Eastsound. Enjoy free WiFi, free parking, and a terrace. Popular attractions Darvill's Bookstore and Orcas Island Historical Museum ...
9/10 Wonderful! (117 reviews)
"The kitchen and bathroom were well stocked."

Reviewed on Apr 3, 2024

Landmark Inn on Orcas Island
Trumpeter Inn
Trumpeter Inn
3 out of 5
318 Trumpeter Way, Friday Harbor, WA
  • 13 min drive from Roche Harbor Marina
The price is $160 per night from Apr 21 to Apr 22
$160
per night
Apr 21 - Apr 22
Stay at this 3-star B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the breakfast and the comfy beds in our reviews. ...
9.8/10 Exceptional! (182 reviews)
"Was a great stay. Would come back"

Reviewed on Apr 7, 2024

Trumpeter Inn
Deer Harbor Inn
Deer Harbor Inn
3 out of 5
33 Inn Lane, Deer Harbor, WA
  • 28 min walk from Roche Harbor Marina
The price is $172 per night from Apr 20 to Apr 21
$172
per night
Apr 20 - Apr 21
Stay at this 3-star hotel in Deer Harbor. Enjoy free WiFi, free parking, and a terrace. Popular attractions Skull Island State Park and West Sound Marina are ...
8/10 Very Good! (141 reviews)
"Great Inn to stay"

Reviewed on Apr 17, 2024

Deer Harbor Inn
See all 528 properties in San Juan Islands
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

HOTW-Hotel-Deals-726-959@2x.jpg (1918×258)*Savings based on Hot Rate® hotel bookings as compared with the lowest published rates found on leading retail travel sites. Hot Rates are different from retail rates. With Hot Rates you enter the date, location and star rating. Hotel revealed only after booking. All bookings final.

Find cheap hotels in San Juan Islands

You’re not an average traveler—and Hotwire knows it. Your wanderlust takes you off the beaten path to discover unique adventures and every travel destination’s lesser-known tourist scenes. Hotwire has the hookup! Book your San Juan Islands hotel with Hotwire to complete your one-of-a-kind travel checklist.

For you, intrepid voyager, Hotwire has a large selection of the best hotels in San Juan Islands.

Choosing the right hotel in Washington has everything to do with the way you want your trip to go. If you’ve scribbled a few obscure destinations on your itinerary, you probably already have a good sense of how your getaway is taking shape. Lean into that by booking one of San Juan Islands’s 528 hotels. Choose the one that best catches your trip’s tourist drift.

If you’re traveling during the week for business, Hotwire can score you a luxury hotel for as low as $103. In town for pleasure? Hotwire still has you covered. If you’re in the mood for a quick last-minute weekend getaway or spa retreat, you can get up to 60% San Juan Islands hotel deals at the last minute.

While traveling, where you stay plays a major role in your overall vacation enjoyment. Choosing the right hotel is just as important as making sure you book the right flight and car rental. If you’re traveling with family or friends, you may need to book a hotel with connecting rooms. If you enjoy an elegant and relaxing hotel ambiance, opt for one of Hotwire’s luxury hotels in San Juan Islands. No matter your reason for visiting San Juan Islands, with Hotwire’s large selection of hotels in the area, you’re sure to book a hotel that meets all your accommodation needs.

Frequently Asked Questions About San Juan Islands hotels

Where can I find the best last-minute travel deals?

If you’re traveling in the spirit of spontaneity, you’ll love the idea of leaving your exact hotel choice up to chance. With Hotwire Hot Rates, you can save up to 60% off your next flight, hotel, or car rental. Just plug in your general preferences and let Hotwire choose last-minute hotel deals in San Juan Islands for as low as $103.

How many hotels are there in San Juan Islands?

With over 528 hotels in San Juan Islands, you’re sure to find one that best matches your travel mood. When you book with Hotwire, you can score a stellar home away from home for as low as $103.

How to find cheap car rentals in San Juan Islands?

Finding a cheap car rental deal in San Juan Islands is as easy as scoring cheap hotels in San Juan Islands. Hotwire partners with top-of-the-line car rental companies to bring you a large selection of affordable options. Whether you’re in need of a large SUV for the entire family or a more compact but stylish vehicle, Hotwire has you covered. You can even save up to 60% off a car rental deal if you book a Hotwire Hot Rate at the last minute.

Is it safe to travel to San Juan Islands now?

With recent COVID-19 closures and reopenings, many people are wondering, “Is it safe to travel to San Juan Islands right now?” When it’s time to book your getaway, be sure to check out the most up-to-date information on all safety measures, any restrictions, and guidance on traveling during the coronavirus pandemic.